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Your specific Favorites are set up through File Maintenance. The Orders Management Console is used for loading the compendiums, not Favorites lists.
To handle the view on the Compendium Management window, you can filter what you see (All, lab or radiology). You cannot save when filters are active. You can use the options Keep Mine, Accept Downloaded, Automatic, and Manual on the bottom toolbar to reconcile the downloaded (vendor) compendium data.